| Item Type | Name |
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Concept
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Base Sequence
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Concept
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Binding Sites
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Concept
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Genes, Bacterial
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Concept
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Genes, Regulator
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Concept
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Intestine, Small
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Concept
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National Library of Medicine (U.S.)
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Concept
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Mice, Inbred Strains
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Concept
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Molecular Sequence Data
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Concept
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Regulatory Sequences, Nucleic Acid
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Concept
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Salmonella Infections
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Concept
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Salmonella Infections, Animal
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Concept
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Salmonella typhimurium
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Concept
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Selection, Genetic
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Concept
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Symbiosis
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Concept
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Templates, Genetic
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Concept
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Signal Transduction
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Concept
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Spleen
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Concept
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Sputum
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Concept
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Statistics as Topic
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Concept
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Streptomycin
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Concept
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Stress, Physiological
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Concept
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Substrate Specificity
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Concept
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Succinate Dehydrogenase
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Concept
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Succinates
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Concept
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Sugar Acids
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Concept
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Siderophores
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Concept
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Sequence Analysis
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Concept
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Sequence Analysis, RNA
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Concept
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Heat-Shock Response
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Concept
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Genome
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Concept
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Genome, Bacterial
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Concept
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Regulon
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Concept
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Oligonucleotide Array Sequence Analysis
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Concept
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Sigma Factor
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Concept
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Software
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Concept
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Species Specificity
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Concept
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Spectrophotometry
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Concept
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Genome-Wide Association Study
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Concept
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United States
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Concept
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Molecular Sequence Annotation
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Concept
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High-Throughput Nucleotide Sequencing
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Concept
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Survival Analysis
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Concept
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Transcriptome
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Concept
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Dietary Supplements
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Concept
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Electrophoretic Mobility Shift Assay
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Concept
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Cell-Free System
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Concept
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Operon
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Academic Article
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In search of the minimal Escherichia coli genome.
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Academic Article
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Microarray expression profiling: capturing a genome-wide portrait of the transcriptome.
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Academic Article
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An Escherichia coli MG1655 lipopolysaccharide deep-rough core mutant grows and survives in mouse cecal mucus but fails to colonize the mouse large intestine.
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Academic Article
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Multiple regulators control expression of the Entner-Doudoroff aldolase (Eda) of Escherichia coli.
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Academic Article
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Guanosine 3',5'-bispyrophosphate coordinates global gene expression during glucose-lactose diauxie in Escherichia coli.
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Academic Article
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Evaluation of a model for Escherichia coli O157:H7 colonization in streptomycin-treated adult cattle.
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Academic Article
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Precolonized human commensal Escherichia coli strains serve as a barrier to E. coli O157:H7 growth in the streptomycin-treated mouse intestine.
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Academic Article
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Role of catecholate siderophores in gram-negative bacterial colonization of the mouse gut.
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Academic Article
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An Escherichia coli Nissle 1917 missense mutant colonizes the streptomycin-treated mouse intestine better than the wild type but is not a better probiotic.
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Academic Article
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Escherichia coli EDL933 requires gluconeogenic nutrients to successfully colonize the intestines of streptomycin-treated mice precolonized with E. coli Nissle 1917.
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Academic Article
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A Simple In Vitro Gut Model for Studying the Interaction between Escherichia coli and the Intestinal Commensal Microbiota in Cecal Mucus.
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Academic Article
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Gene expression profiling of Escherichia coli growth transitions: an expanded stringent response model.
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Academic Article
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Genes of the GadX-GadW regulon in Escherichia coli.
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Academic Article
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Evidence that acetyl phosphate functions as a global signal during biofilm development.
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Academic Article
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Meta-analysis of published transcriptional and translational fold changes reveals a preference for low-fold inductions.
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Academic Article
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Respiration of Escherichia coli in the mouse intestine.
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Academic Article
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L-fucose stimulates utilization of D-ribose by Escherichia coli MG1655 DeltafucAO and E. coli Nissle 1917 DeltafucAO mutants in the mouse intestine and in M9 minimal medium.
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Academic Article
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Glycogen and maltose utilization by Escherichia coli O157:H7 in the mouse intestine.
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Academic Article
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The global, ppGpp-mediated stringent response to amino acid starvation in Escherichia coli.
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Academic Article
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The streptomycin-treated mouse intestine selects Escherichia coli envZ missense mutants that interact with dense and diverse intestinal microbiota.
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Academic Article
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Nutritional basis for colonization resistance by human commensal Escherichia coli strains HS and Nissle 1917 against E. coli O157:H7 in the mouse intestine.
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Academic Article
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Unprecedented high-resolution view of bacterial operon architecture revealed by RNA sequencing.
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Academic Article
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GenoBase: comprehensive resource database of Escherichia coli K-12.
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Academic Article
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Quantitative bacterial transcriptomics with RNA-seq.
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Academic Article
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Defective lysis of streptomycin-resistant escherichia coli cells infected with bacteriophage f2.
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Academic Article
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GadE (YhiE) activates glutamate decarboxylase-dependent acid resistance in Escherichia coli K-12.
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Academic Article
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Transcriptional organization and regulation of the L-idonic acid pathway (GntII system) in Escherichia coli.
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Academic Article
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Glycolytic and gluconeogenic growth of Escherichia coli O157:H7 (EDL933) and E. coli K-12 (MG1655) in the mouse intestine.
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Academic Article
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GntP is the Escherichia coli Fructuronic acid transporter and belongs to the UxuR regulon.
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Academic Article
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Mouse intestine selects nonmotile flhDC mutants of Escherichia coli MG1655 with increased colonizing ability and better utilization of carbon sources.
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Academic Article
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The emerging world of wikis.
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Academic Article
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Salmonella enterica serovar Typhimurium mutants unable to convert malate to pyruvate and oxaloacetate are avirulent and immunogenic in BALB/c mice.
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Academic Article
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Discretely calibrated regulatory loops controlled by ppGpp partition gene induction across the 'feast to famine' gradient in Escherichia coli.
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Academic Article
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Transcriptional regulator PerA influences biofilm-associated, platelet binding, and metabolic gene expression in Enterococcus faecalis.
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Academic Article
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DNA array analysis in a Microsoft Windows environment.
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Academic Article
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Gene expression profiling of the pH response in Escherichia coli.
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Academic Article
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Collaborative regulation of Escherichia coli glutamate-dependent acid resistance by two AraC-like regulators, GadX and GadW (YhiW).
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Academic Article
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Carbon nutrition of Escherichia coli in the mouse intestine.
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Academic Article
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Simulated annealing of microarray data reduces noise and enables cross-experimental comparisons.
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Academic Article
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Role of gluconeogenesis and the tricarboxylic acid cycle in the virulence of Salmonella enterica serovar Typhimurium in BALB/c mice.
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Academic Article
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Role of motility and the flhDC Operon in Escherichia coli MG1655 colonization of the mouse intestine.
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Academic Article
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A Salmonella enterica serovar typhimurium succinate dehydrogenase/fumarate reductase double mutant is avirulent and immunogenic in BALB/c mice.
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Academic Article
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Comparison of carbon nutrition for pathogenic and commensal Escherichia coli strains in the mouse intestine.
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Academic Article
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Genotype and phenotypes of an intestine-adapted Escherichia coli K-12 mutant selected by animal passage for superior colonization.
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Academic Article
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An infection-relevant transcriptomic compendium for Salmonella enterica Serovar Typhimurium.
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Academic Article
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Commensal and Pathogenic Escherichia coli Metabolism in the Gut.
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Academic Article
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Astaxanthin-Shifted Gut Microbiota Is Associated with Inflammation and Metabolic Homeostasis in Mice.
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Grant
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Mechanisms of Nutrient Competition in the Intestine
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Grant
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Growth and Colonization of the Intestine by E. coli
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Grant
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E. coli Growth Parameters in the Intestine
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Grant
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Growth and Colonization of the Intestine by E. coli
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Grant
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Symbiosis of E. coli and the Intestinal Microbiota in a Mouse Model
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Academic Article
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Calcium-Regulated Protein CarP Responds to Multiple Host Signals and Mediates Regulation of Pseudomonas aeruginosa Virulence by Calcium.
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Academic Article
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The primary transcriptome, small RNAs and regulation of antimicrobial resistance in Acinetobacter baumannii ATCC 17978.
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Academic Article
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Aspartate in the intestine: dual service as anaerobic electron acceptor and nitrogen source.
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Academic Article
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OmpC-Dependent Bile Tolerance Contributes to E. coli Colonization of the Mammalian Intestine.
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